Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015915022.1_cds_XP_016464940.1_57935
CDS Infomation

[gene=LOC107787846] [db_xref=GeneID:107787846] [protein=3-dehydroquinate synthase, chloroplastic] [protein_id=XP_016464940.1] [location=join(23975..24276,26479..26629,26719..26886,27174..27400,27907..28030,28410..28472,28627..28770,28851..28982)] [gbkey=CDS]
Sequence

ATGGCGTCGTCTTTCTGCCCAAAACAGGCTCTATCTTTCACCAGTTCAGCCCACCAACTT
CACCAATCCAGAGCAATTCCACGTGACATCCACGTGCGTTTCCCTTCTTCTTCCAGGTGT
GGGGTGAAGTCGAGTGCCGCACGATTTAAGGTGCTGGCAACTTCTGCGACGAAAGTGATG
GATCAGTCGCCGAGTAAAGCGAGTTCTGAGGCTCCTACAGTTGTTGAAGTGGATCTGGGT
AATCGGAGCTACCCGATTTATATTGGGTCTGGACTTCTTGATCAACCTGACCTCCTTCAA
AGACATATTCATGGGAAGAGAGTCCTTGTAGTGACTAACACTACAGTTGCCCCTCTATAT
CTTGATAAAACAATAAGTGCTTTGACAGACGGAAACCCTAATGTTACTGTAGAAAGTGTC
ATTTTGCCAGATGGTGAGCAATTTAAAAACATGGATACTCTTATGAAAGTCTTTGATAAG
GCCATCGAATCAAGGCTGGACCGTCGTTGTACATTCGTCGCCCTCGGTGGTGGAGTCATA
GGTGACATGTGTGGATATGCTGCCGCTTCCTACCTCCGTGGAGTTAATTTTATTCAGATT
CCTACGACTGTTATGGCACAGGTAGATTCTTCAGTTGGAGGCAAAACTGGAATAAACCAT
CCGCTTGGTAAAAATATGATTGGAGCATTCTACCAACCACAGTGTGTGCTTGTAGACACG
GACACCCTGGATACATTACCAGATAGAGAATTAGCATCCGGCCTCGCAGAGGTGATAAAA
TATGGGCTCATTAGAGACGCTGAGTTCTTTGAGTGGCAAGAGCAGAATATGCCATTATTA
TTAGCAAGGGAGCCTACTGCATTTACCTATGCTATCAAGCGTTCCTGTGAAAACAAAGCA
GAGGTTGTTTCTTTAGATGAGAAGGAAAGCGGACTGAGGGCAACTTTGAACTTGGGTCAT
ACCTTTGGTCATGCAGTTGAGACTGGCTTTGGCTATGGGCAGTGGCTTCACGGAGAAGCA
GTTGCTGCTGGCACGGTCATGGCTGTTGACATGTCACGCCGCCTTGGTTGGATTGATGAT
TCACTGGTACAGCGAGTGCACAATATCTTACAACAGGCAAAGCTGCCGACTGCACCTCCA
GAAACTATGACTGTAGAGATGTTCAAGTCTATCATGGCTGTTGATAAAAAAGTGGCAGAT
GGGAAGCTAAGACTCATCCTTCTAAAAGGTCCGCTAGGTAACTGTGTCTTTACCGGTGAT
TATGACCAGAAGGTCCTCGATGAAACACTGCGTGCATTTTCCAAATCTTAA

Peptide Sequence

PEP ID

XP_016464940.1
PEP Infomation

PREDICTED: 3-dehydroquinate synthase, chloroplastic [Nicotiana tabacum]
Sequence

MASSFCPKQALSFTSSAHQLHQSRAIPRDIHVRFPSSSRCGVKSSAARFKVLATSATKVM
DQSPSKASSEAPTVVEVDLGNRSYPIYIGSGLLDQPDLLQRHIHGKRVLVVTNTTVAPLY
LDKTISALTDGNPNVTVESVILPDGEQFKNMDTLMKVFDKAIESRLDRRCTFVALGGGVI
GDMCGYAAASYLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNMIGAFYQPQCVLVDT
DTLDTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMPLLLAREPTAFTYAIKRSCENKA
EVVSLDEKESGLRATLNLGHTFGHAVETGFGYGQWLHGEAVAAGTVMAVDMSRRLGWIDD
SLVQRVHNILQQAKLPTAPPETMTVEMFKSIMAVDKKVADGKLRLILLKGPLGNCVFTGD
YDQKVLDETLRAFSKS

Transcript Sequence

Gene sequence data has not been registered.